Here is a list of all class members with links to the classes they belong to:

- c -

• calcDetPriority() : simulator.AgentContainer
• calcdFdT() : simulator.diffusionSolver.Solver_chemostat
• calcdMUdS() : simulator.reaction.Reaction , simulator.reaction.SingleMonod , simulator.reaction.ReactionFactor , simulator.reaction.FirstOrder , simulator.reaction.ReactionFactorWithConstant , simulator.reaction.ReactionGrowthFitness
• calcdMUdT() : simulator.reaction.FirstOrder , simulator.reaction.Reaction , simulator.reaction.ReactionFactor , simulator.reaction.ReactionFactorWithConstant , simulator.reaction.ReactionGrowthFitness , simulator.reaction.SingleMonod
• calcdYdT() : simulator.diffusionSolver.Solver_chemostat
• calcJacobian() : simulator.diffusionSolver.Solver_chemostat
• calculateComputationDomainGrids() : simulator.geometry.Domain
• calculateNewAgentPosition() : simulator.agent.Species
• calculateTopOfBoundaryLayer() : simulator.geometry.Domain
• callParamMutator() : simulator.agent.zoo.MultiEpisomeParam
• Camera() : povray.Camera
• cc : simulator.agent.LocatedGroup
• cellInjectionEndHour : simulator.agent.Species
• cellInjectionStartHour : simulator.agent.Species
• cellRunSpeed : simulator.agent.LocatedParam
• Chart() : utils.Chart
• checkAgentBirth() : simulator.Simulator
• checkAgentMove() : simulator.agent.Species
• checkBoundaries() : simulator.agent.LocatedAgent
• checkDilationRadius() : simulator.geometry.Domain
• checkForBioFilmContact() : simulator.agent.Species
• checkForQuietMode() : idyno.Idynomics
• checkForReleaseUpdate() : idyno.Idynomics
• checkForRestart() : idyno.Idynomics
• checkGridSize() : simulator.AgentContainer
• checkPowerOfTwo() : utils.FftOperations
• chooseFile() : idyno.Idynomics
• chronoMessageIn() : utils.LogFile
• chronoMessageOut() : utils.LogFile
• clone() : simulator.agent.ActiveAgent , simulator.agent.Agent , simulator.agent.LocatedAgent , simulator.agent.SpecialisedAgent , simulator.agent.zoo.Bacterium , simulator.agent.zoo.Episome , simulator.agent.zoo.MultiEpisome , simulator.agent.zoo.ParticulateEPS , simulator.geometry.ContinuousVector , simulator.geometry.DiscreteVector
• close() : utils.ZipArchive
• closeFile() : utils.InitialisationErrorLog , utils.LogFile , utils.ResultFile
• color : simulator.agent.Species
• compatibilityMarker : simulator.agent.zoo.EpisomeParam
• Complex() : utils.Complex
• ComplexArray() : utils.ComplexArray
• computeAllUptakeRate() : simulator.reaction.SingleMonod
• computeAverage() : utils.MatrixOperations
• computeCvf() : simulator.detachment.ConnectedVolume
• computeDifferenceVector() : simulator.agent.LocatedAgent , simulator.agent.LocatedGroup
• computeFlow() : simulator.geometry.Bulk
• computeLevelSet() : simulator.detachment.LevelSet
• computeMarginalDiffMu() : simulator.reaction.FirstOrder , simulator.reaction.Reaction , simulator.reaction.ReactionFactor , simulator.reaction.ReactionFactorWithConstant , simulator.reaction.ReactionGrowthFitness , simulator.reaction.SingleMonod
• computeMassGrowthRate() : simulator.reaction.FirstOrder , simulator.reaction.Reaction , simulator.reaction.ReactionFactor , simulator.reaction.ReactionFactorWithConstant , simulator.reaction.ReactionGrowthFitness , simulator.reaction.SingleMonod
• computeMove() : simulator.agent.LocatedGroup
• computeNorm() : simulator.diffusionSolver.multigrid.MultigridUtils , utils.MatrixOperations
• computeSpecGrowthRate() : simulator.reaction.FirstOrder , simulator.reaction.Reaction , simulator.reaction.ReactionFactor , simulator.reaction.ReactionFactorWithConstant , simulator.reaction.ReactionGrowthFitness , simulator.reaction.SingleMonod
• computeSpecificGrowthRate() : simulator.reaction.ReactionFactorWithConstant , simulator.reaction.SingleMonod , simulator.reaction.Reaction , simulator.reaction.FirstOrder , simulator.reaction.Reaction , simulator.reaction.ReactionFactor , simulator.reaction.ReactionFactorWithConstant , simulator.reaction.ReactionGrowthFitness , simulator.reaction.SingleMonod
• computeSpecRate() : simulator.reaction.Reaction , simulator.reaction.FirstOrder , simulator.reaction.ReactionFactor , simulator.reaction.ReactionFactorWithConstant , simulator.reaction.ReactionGrowthFitness , simulator.reaction.SingleMonod
• computeSum() : simulator.diffusionSolver.multigrid.MultigridUtils , utils.GridOperations , utils.MatrixOperations
• computeSumP() : utils.MatrixOperations
• computeUptakeRate() : simulator.reaction.SingleMonod , simulator.reaction.ReactionFactorWithConstant , simulator.reaction.FirstOrder , simulator.reaction.ReactionGrowthFitness , simulator.reaction.SingleMonod , simulator.reaction.Reaction , simulator.reaction.FirstOrder , simulator.reaction.ReactionFactor
• ConnectedVolume() : simulator.detachment.ConnectedVolume
• contains() : simulator.geometry.Bulk
• containsBulk() : simulator.World
• continueRunning : simulator.Simulator
• ContinuousVector() : simulator.geometry.ContinuousVector
• copy() : soft_update.Update_IDynomics
• copyFile() : utils.ResultFile
• copyValuesTo() : utils.MatrixOperations
• coreMatrixToString() : simulator.diffusionSolver.multigrid.MultigridUtils
• correctCrossedFrontBackBoundaries() : simulator.agent.Species
• correctCrossedLeftRightBoundaries() : simulator.agent.Species
• cosAngle() : simulator.geometry.ContinuousVector
• counter : simulator.geometry.FluctEnv
• create_Required_Number_Of_SelfAttaching_Agents() : simulator.Simulator
• createBoundaryLayerPop() : simulator.agent.Species
• createByExcretion() : simulator.agent.zoo.ParticulateEPS
• createCharts() : simulator.Simulator
• createDictionary() : simulator.Simulator
• createFiles() : simulator.Simulator
• createGrid() : simulator.geometry.Domain
• createInertByExcretion() : simulator.agent.zoo.ParticulateEPS
• createNewAgent() : simulator.agent.SpecialisedAgent , simulator.agent.zoo.Bacterium , simulator.agent.zoo.Episome , simulator.agent.LocatedAgent , simulator.agent.zoo.ParticulateEPS , simulator.agent.ActiveAgent , simulator.agent.HasSpecies , simulator.agent.zoo.MultiEpisome
• createOtherSide() : simulator.geometry.boundaryConditions.BoundaryCyclic
• createOutputGrid() : simulator.AgentContainer
• createPop() : simulator.agent.Species
• createReactions() : simulator.Simulator
• createShovGrid() : simulator.AgentContainer
• createSimulator() : simulator.Simulator
• createSolutes() : simulator.Simulator
• createSolvers() : simulator.Simulator
• createSpecies() : simulator.Simulator
• createWorld() : simulator.Simulator
• cube() : utils.ExtraMath
• cumProb : simulator.geometry.FluctEnv
• currentPath : idyno.Idynomics
• currentSim : simulator.geometry.Domain
• currentSimulator : simulator.agent.Species
• cyclicIndex() : simulator.geometry.Domain