Public Member Functions | |
void | init (Simulator aSim, XMLParser aSpeciesRoot) |
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void | init (Simulator aSim, XMLParser aSpeciesRoot) |
Stores the reaction parameters for an active species and calculates the particle density of compounds involved in the reaction. More... | |
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void | init (Simulator aSim, XMLParser aSpeciesRoot) |
Read in specific parameters for this species, changing the default if required. More... | |
Public Attributes | |
int | nCopy |
double | pilusLength = 2 |
int | compatibilityMarker = 1 |
double | exchangeLag = 5 |
double | receptionLag = 1 |
double | lossProbability = 0 |
double | transferProficiency = 0 |
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double[] | particleDensity |
double[][] | soluteYield |
double[][] | particleYield |
double[][] | reactionKinetic |
double[] | lysisYield |
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double | initialMassCV = .1 |
Called during creation of the species
int simulator.agent.zoo.EpisomeParam.compatibilityMarker = 1 |
double simulator.agent.zoo.EpisomeParam.exchangeLag = 5 |
double simulator.agent.zoo.EpisomeParam.lossProbability = 0 |
int simulator.agent.zoo.EpisomeParam.nCopy |
double simulator.agent.zoo.EpisomeParam.pilusLength = 2 |
double simulator.agent.zoo.EpisomeParam.receptionLag = 1 |
double simulator.agent.zoo.EpisomeParam.transferProficiency = 0 |