- s -

• sameSign() : utils.ExtraMath
• segregation() : simulator.agent.zoo.Episome , simulator.agent.zoo.MultiEpisome
• selfAttachmentAgentBirth() : simulator.Simulator
• sendDiff() : simulator.geometry.ContinuousVector
• sendHeader() : simulator.agent.HasSpecies , simulator.agent.LocatedAgent , simulator.agent.zoo.BactAdaptable , simulator.agent.zoo.Bacterium , simulator.agent.ActiveAgent , simulator.agent.zoo.Episome , simulator.agent.zoo.MultiEpisome , simulator.agent.Agent , simulator.agent.zoo.ParticulateEPS
• sendName() : simulator.agent.Agent
• sendNewAgent() : simulator.agent.HasSpecies , simulator.agent.SpecialisedAgent , simulator.agent.Species , simulator.agent.zoo.Bacterium , simulator.agent.zoo.Episome , simulator.agent.zoo.MultiEpisome , simulator.agent.zoo.ParticulateEPS
• sendSum() : simulator.geometry.ContinuousVector , simulator.geometry.DiscreteVector
• set() : simulator.geometry.ContinuousVector , simulator.geometry.DiscreteVector
• setActiveFrac() : povray.ParticleWithCapsule
• setAgentAngleOfMovement() : simulator.agent.Species
• setAllValueAt() : simulator.SpatialGrid
• setAngle() : povray.Camera
• setAnglePerspective() : povray.Povray3DScene
• setBoundary() : simulator.geometry.boundaryConditions.AllBC , simulator.geometry.boundaryConditions.BoundaryBulk , simulator.geometry.boundaryConditions.BoundaryConstant , simulator.geometry.boundaryConditions.BoundaryCyclic , simulator.geometry.boundaryConditions.BoundaryGasMembrane , simulator.geometry.boundaryConditions.BoundaryZeroFlux , simulator.geometry.boundaryConditions.IsBC
• setCenter() : povray.ParticleWithCapsule
• setColor() : povray.Background , povray.Box , povray.LightSource
• setColorCapsule() : povray.ParticleWithCapsule
• setColorCore() : povray.ParticleWithCapsule
• setComplexAt() : utils.ComplexArray
• setCopyNumber() : simulator.agent.zoo.MultiEpisome
• setCoreRadius() : povray.ParticleWithCapsule
• setCorner1() : povray.Box
• setCorner2() : povray.Box
• setCurrentTimeStep() : idyno.SimTimer
• setDefaultCopyNumber() : simulator.agent.zoo.Episome , simulator.agent.zoo.MultiEpisome
• setDilutionAndY0() : simulator.diffusionSolver.Solver_chemostat
• setDivisionDirection() : simulator.agent.LocatedAgent
• setEnv() : simulator.geometry.FluctEnv
• setEnvCycle() : simulator.geometry.FluctEnv
• setFinest() : simulator.diffusionSolver.multigrid.MultigridSolute
• setGrid() : simulator.SpatialGrid
• setGridIndex() : simulator.agent.LocatedAgent
• setHost() : simulator.agent.zoo.Episome , simulator.agent.zoo.MultiEpisome
• setImag() : utils.Complex
• setImagAt() : utils.ComplexArray
• setInitialCopyNumber() : simulator.agent.zoo.MultiEpisome
• setLocation() : povray.Camera , povray.LightSource , simulator.agent.LocatedAgent
• setLook_at() : povray.Camera
• setNameCapsule() : povray.ParticleWithCapsule
• setNameCore() : povray.ParticleWithCapsule
• setNetGrowth() : simulator.agent.ActiveAgent
• setPath() : utils.Chart
• setReal() : utils.Complex
• setRealAt() : utils.ComplexArray
• setReferenceSide() : simulator.diffusionSolver.multigrid.MultigridSolute , simulator.diffusionSolver.multigrid.SinglegridPressure
• setRight() : povray.Camera
• setSeed() : utils.MTRandom
• setSidePerspective() : povray.Povray3DScene
• setSoluteGridToBulk() : simulator.diffusionSolver.multigrid.SinglegridPressure , simulator.diffusionSolver.multigrid.MultigridSolute
• setSpecies() : simulator.agent.HasSpecies , simulator.agent.SpecialisedAgent
• setSpeciesParam() : simulator.agent.SpecialisedAgent
• setSwitchState() : simulator.agent.zoo.BactAdaptable
• setSwitchToOff() : simulator.agent.zoo.BactAdaptable
• setSwitchToOn() : simulator.agent.zoo.BactAdaptable
• setTimerState() : idyno.SimTimer
• setTopPerspective() : povray.Povray3DScene
• setUp() : povray.Camera
• setValue() : simulator.geometry.Bulk
• setValueAt() : simulator.SpatialGrid , utils.VectorizedArray
• setValues() : povray.VectorProperty , simulator.diffusionSolver.multigrid.MultigridUtils , utils.MatrixOperations
• setWholeArray() : utils.ComplexArray
• setYield() : simulator.reaction.ReactionGrowthFitness
• shoveAllLocated() : simulator.AgentContainer
• show_Update_Box() : idyno.Idynomics
• shrinkOnBorder() : simulator.AgentContainer
• shuffleCoordinates() : simulator.agent.Species
• simIsFinished() : idyno.SimTimer
• SimpleInhibition() : simulator.reaction.kinetic.SimpleInhibition
• SimTimer() : idyno.SimTimer
• simulationIsRunning() : simulator.Simulator
• Simulator() : simulator.Simulator
• SinglegridPressure() : simulator.diffusionSolver.multigrid.SinglegridPressure
• SingleMonod() : simulator.reaction.SingleMonod
• SoluteGrid() : simulator.SoluteGrid
• solveCoarsest() : simulator.diffusionSolver.Solver_multigrid
• solveDiffusionReaction() : simulator.diffusionSolver.Solver_pressure , simulator.diffusionSolver.Solver_multigrid , simulator.diffusionSolver.DiffusionSolver , simulator.diffusionSolver.Solver_chemostat
• SpatialGrid() : simulator.SpatialGrid
• SpecialisedAgent() : simulator.agent.SpecialisedAgent
• Species() : simulator.agent.Species
• specifyResolution() : simulator.SoluteGrid
• sq() : utils.ExtraMath
• startIDynomics() : idyno.Idynomics
• staticBuilder() : simulator.detachment.LevelSet , simulator.geometry.boundaryConditions.AllBC
• stddev() : utils.ExtraMath
• step() : simulator.Simulator , simulator.agent.Agent , simulator.AgentContainer
• stepBoundary() : simulator.geometry.shape.Planar
• stepSolveDiffusionReaction() : simulator.diffusionSolver.Solver_multigrid
• sub() : utils.ComplexArray , utils.Complex , utils.ComplexArray
• subtract() : simulator.geometry.ContinuousVector , simulator.diffusionSolver.multigrid.MultigridUtils , utils.MatrixOperations
• subtractFrom() : utils.GridOperations , utils.MatrixOperations
• sumVector() : utils.ExtraMath
• switchIsOn() : simulator.agent.zoo.BactAdaptable
• switchOffreaction() : simulator.agent.HasReaction , simulator.agent.ActiveAgent
• switchOnReaction() : simulator.agent.ActiveAgent , simulator.agent.HasReaction