Here is a list of all class members with links to the classes they belong to:
- i -
- i
: simulator.geometry.DiscreteVector
- iDyno_New_Released_Version_Check()
: idyno.Idynomics
- increaseCopyNumber()
: simulator.agent.zoo.MultiEpisome
- indexCalc()
: simulator.geometry.FluctEnv
- indices
: simulator.geometry.FluctEnv
- init()
: simulator.agent.LocatedParam
, simulator.agent.zoo.MultiEpisome
, simulator.geometry.boundaryConditions.BoundaryCyclic
, simulator.geometry.boundaryConditions.BoundaryGasMembrane
, simulator.agent.zoo.MultiEpisomeParam
, simulator.geometry.boundaryConditions.BoundaryZeroFlux
, simulator.geometry.boundaryConditions.IsBC
, simulator.agent.SpeciesParam
, simulator.agent.zoo.ParticulateEPS
, simulator.reaction.FirstOrder
, simulator.reaction.kinetic.FirstOrderKinetic
, simulator.agent.zoo.ParticulateEPSParam
, simulator.reaction.kinetic.HaldaneKinetic
, simulator.reaction.kinetic.HillKinetic
, simulator.agent.zoo.BactAdaptableParam
, simulator.detachment.DS_Biomass
, simulator.reaction.kinetic.IsKineticFactor
, simulator.reaction.kinetic.LinearKinetic
, simulator.detachment.DS_Proportional
, simulator.reaction.kinetic.MonodKinetic
, simulator.reaction.kinetic.SimpleInhibition
, simulator.agent.zoo.BactEPSParam
, simulator.detachment.DS_Quadratic
, simulator.reaction.Reaction
, simulator.reaction.ReactionFactor
, simulator.detachment.DS_SolGrad
, simulator.reaction.ReactionFactorWithConstant
, simulator.reaction.ReactionGrowthFitness
, simulator.agent.ActiveParam
, simulator.agent.zoo.Bacterium
, simulator.detachment.LevelSet
, simulator.reaction.SingleMonod
, simulator.World
, simulator.diffusionSolver.DiffusionSolver
, utils.Chart
, simulator.agent.zoo.BacteriumParam
, simulator.diffusionSolver.Solver_chemostat
, simulator.diffusionSolver.Solver_multigrid
, simulator.agent.LocatedGroup
, simulator.agent.zoo.Episome
, simulator.diffusionSolver.Solver_pressure
, simulator.geometry.boundaryConditions.AllBC
, simulator.agent.zoo.EpisomeParam
, simulator.geometry.boundaryConditions.BoundaryBulk
, simulator.geometry.boundaryConditions.BoundaryConstant
- initAndSolve()
: simulator.diffusionSolver.DiffusionSolver
- initErrorLog
: idyno.Idynomics
- initFromAgent()
: simulator.reaction.ReactionGrowthFitness
, simulator.reaction.SingleMonod
, simulator.reaction.FirstOrder
, simulator.reaction.kinetic.FirstOrderKinetic
, simulator.reaction.kinetic.HaldaneKinetic
, simulator.reaction.kinetic.HillKinetic
, simulator.reaction.kinetic.IsKineticFactor
, simulator.reaction.kinetic.LinearKinetic
, simulator.reaction.kinetic.MonodKinetic
, simulator.reaction.kinetic.SimpleInhibition
, simulator.reaction.Reaction
, simulator.reaction.ReactionFactor
, simulator.reaction.ReactionFactorWithConstant
- initFromProtocolFile()
: simulator.agent.ActiveAgent
, simulator.agent.Agent
, simulator.agent.LocatedAgent
, simulator.agent.SpecialisedAgent
, simulator.agent.zoo.BactAdaptable
, simulator.agent.zoo.Bacterium
, simulator.agent.zoo.Episome
, simulator.agent.zoo.MultiEpisome
, simulator.agent.zoo.ParticulateEPS
- initFromResultFile()
: simulator.agent.ActiveAgent
, simulator.agent.Agent
, simulator.agent.LocatedAgent
, simulator.agent.zoo.BactAdaptable
, simulator.agent.zoo.Bacterium
, simulator.agent.zoo.Episome
, simulator.agent.zoo.ParticulateEPS
- initGrids()
: simulator.SpatialGrid
- initialCost
: simulator.agent.zoo.MultiEpisomeParam
- initializeConcentrationFields()
: simulator.diffusionSolver.DiffusionSolver
, simulator.diffusionSolver.Solver_chemostat
, simulator.diffusionSolver.Solver_multigrid
, simulator.diffusionSolver.Solver_pressure
- initializeCvf()
: simulator.detachment.ConnectedVolume
- initialMassCV
: simulator.agent.SpeciesParam
- initLoop()
: simulator.diffusionSolver.multigrid.MultigridSolute
- initPovRay()
: povray.PovRayWriter
- initSimulation()
: idyno.Idynomics
- injectionOffAttachmentFrequency
: simulator.agent.Species
- injectionOnAttachmentFrequency
: simulator.agent.Species
- instanceCreator()
: utils.XMLParser
- interact()
: simulator.agent.LocatedAgent
, simulator.agent.SpecialisedAgent
- internalIteration
: simulator.diffusionSolver.DiffusionSolver
- internalStep()
: simulator.agent.zoo.MultiEpisome
, simulator.agent.zoo.BactAdaptable
, simulator.agent.ActiveAgent
, simulator.agent.Agent
, simulator.agent.InfoAgent
, simulator.agent.LocatedAgent
, simulator.agent.zoo.BactEPS
, simulator.agent.zoo.Bacterium
, simulator.agent.zoo.Episome
, simulator.agent.zoo.ParticulateEPS
- internTimeStep
: simulator.diffusionSolver.DiffusionSolver
- intersection()
: simulator.geometry.shape.IsShape
, simulator.geometry.shape.Planar
- invComp
: simulator.Simulator
- inverse()
: utils.FftOperations
- is3D
: simulator.Simulator
, simulator.geometry.Domain
, simulator.AgentContainer
, simulator.geometry.Domain
, simulator.SpatialGrid
- isActive()
: simulator.diffusionSolver.DiffusionSolver
, simulator.geometry.boundaryConditions.AllBC
, simulator.geometry.boundaryConditions.IsBC
- isAgentInContactWithAgentInBiofilm()
: simulator.agent.Species
- isAttached()
: simulator.agent.LocatedAgent
- isBulk
: simulator.agent.LocatedGroup
- isCarrier
: simulator.agent.LocatedGroup
- isChemostat
: simulator.Simulator
- isCompatible()
: simulator.agent.zoo.Episome
- isConsistent()
: utils.GridOperations
- isConstSol
: simulator.diffusionSolver.Solver_chemostat
- isCurrentTimeStepInSetInRange()
: idyno.SimTimer
- isCyclic()
: simulator.geometry.boundaryConditions.IsBC
, simulator.geometry.boundaryConditions.AllBC
- isDead
: simulator.agent.SpecialisedAgent
- isDuringNextStep()
: idyno.SimTimer
- isFluctEnv
: simulator.Simulator
- isHighCopy
: simulator.agent.zoo.MultiEpisomeParam
- isHot
: simulator.agent.zoo.MultiEpisome
, simulator.agent.zoo.Episome
- isMoving()
: simulator.agent.LocatedAgent
, simulator.agent.SpecialisedAgent
- isNewCoordAboveBoundaryLayer()
: simulator.agent.Species
- iSolute
: simulator.diffusionSolver.Solver_multigrid
- isOnBoundary()
: simulator.geometry.shape.Planar
, simulator.geometry.shape.IsShape
, simulator.geometry.boundaryConditions.BoundaryCyclic
- isOnShape()
: simulator.geometry.shape.Planar
- isOutside()
: simulator.geometry.boundaryConditions.AllBC
, simulator.geometry.boundaryConditions.IsBC
, simulator.geometry.boundaryConditions.AllBC
, simulator.agent.LocatedGroup
, simulator.geometry.boundaryConditions.BoundaryCyclic
, simulator.geometry.shape.Planar
, simulator.geometry.shape.IsShape
- isPermeableTo
: simulator.geometry.boundaryConditions.BoundaryGasMembrane
- isReadyToConjugate()
: simulator.agent.zoo.Episome
, simulator.agent.zoo.MultiEpisome
- isSupport()
: simulator.geometry.boundaryConditions.IsBC
, simulator.geometry.boundaryConditions.AllBC
- isTransConjugant()
: simulator.agent.zoo.MultiEpisome
- isValid()
: simulator.geometry.ContinuousVector
, simulator.SpatialGrid
, simulator.AgentContainer
- isValidOrPadded()
: simulator.SpatialGrid
- isValidorPadded()
: simulator.SpatialGrid
- isValidOrPadded()
: simulator.SpatialGrid
- isZero()
: simulator.geometry.ContinuousVector