Here is a list of all class members with links to the classes they belong to:
- a -
- accept()
: utils.Jfilter
- ActiveAgent()
: simulator.agent.ActiveAgent
- activeForSolute
: simulator.geometry.boundaryConditions.AllBC
- add()
: simulator.agent.LocatedGroup
, simulator.geometry.DiscreteVector
, utils.ComplexArray
, utils.Complex
, simulator.geometry.ContinuousVector
, utils.Complex
, utils.ComplexArray
, simulator.geometry.ContinuousVector
, utils.ComplexArray
, simulator.geometry.DiscreteVector
, utils.ComplexArray
- addActiveReaction()
: simulator.agent.ActiveAgent
, simulator.agent.HasReaction
- addAgent()
: simulator.reaction.Reaction
- addAllReactions()
: simulator.diffusionSolver.DiffusionSolver
- addAllValues()
: simulator.SpatialGrid
- addBoundary()
: simulator.geometry.Domain
- addCell()
: povray.Biofilm3D
, povray.Povray3DScene
- addMovement()
: simulator.agent.LocatedAgent
- addMoveToAgents()
: simulator.agent.LocatedGroup
- addPushMovement()
: simulator.agent.LocatedAgent
- addReaction()
: simulator.agent.ActiveAgent
, simulator.agent.HasReaction
- addReactionWithSolutes()
: simulator.diffusionSolver.DiffusionSolver
- addSpringMovement()
: simulator.agent.LocatedAgent
- addTo()
: utils.GridOperations
, utils.MatrixOperations
- addToZipArchiveAndDelete()
: utils.ZipArchive
- addToZipArchiveAndKeepLast()
: utils.ZipArchive
- addValueAt()
: simulator.SpatialGrid
- Agent()
: simulator.agent.Agent
- AgentContainer()
: simulator.AgentContainer
- agentFlushedAway()
: simulator.AgentContainer
- agentGrid
: simulator.agent.LocatedGroup
, simulator.Simulator
- agentIter
: simulator.AgentContainer
- agentList
: simulator.AgentContainer
- agentMoveBorderCheck()
: simulator.agent.Species
- AGENTTIMESTEP
: simulator.AgentContainer
- agentTimeStep
: simulator.Simulator
- alea()
: simulator.geometry.ContinuousVector
- allDiffReac
: simulator.diffusionSolver.Solver_multigrid
- allReac
: simulator.diffusionSolver.Solver_chemostat
, simulator.diffusionSolver.Solver_multigrid
- allReactions
: simulator.agent.ActiveAgent
, simulator.agent.zoo.Episome
, simulator.agent.zoo.MultiEpisome
- allSolute
: simulator.diffusionSolver.Solver_chemostat
, simulator.diffusionSolver.Solver_multigrid
- altArray
: utils.ComplexArray
- angleOfMovingAgentXY
: simulator.agent.Species
- angleOfMovingAgentXZ
: simulator.agent.Species
- anInstant
: utils.LogFile
, utils.InitialisationErrorLog
- applyAllBoundary()
: simulator.geometry.Domain
- applyBoundary()
: simulator.geometry.boundaryConditions.AllBC
, simulator.geometry.boundaryConditions.BoundaryBulk
, simulator.geometry.boundaryConditions.BoundaryGasMembrane
, simulator.geometry.boundaryConditions.BoundaryCyclic
, simulator.geometry.boundaryConditions.BoundaryZeroFlux
, simulator.geometry.boundaryConditions.BoundaryConstant
, simulator.geometry.boundaryConditions.IsBC
, simulator.geometry.boundaryConditions.BoundaryCyclic
- applyComputation()
: simulator.diffusionSolver.multigrid.MultigridSolute
- applyReaction()
: simulator.reaction.Reaction
- applyTimeStep()
: idyno.SimTimer
- areaOfACircle()
: utils.ExtraMath
- aSimulator
: idyno.Idynomics
- attachmentMechanism
: simulator.Simulator
- autocatalytic
: simulator.reaction.Reaction
- average()
: utils.ExtraMath