_isSupport | simulator.geometry.boundaryConditions.AllBC | protected |
_myShape | simulator.geometry.boundaryConditions.AllBC | protected |
_mySide | simulator.geometry.boundaryConditions.AllBC | protected |
activeForSolute | simulator.geometry.boundaryConditions.AllBC | protected |
applyBoundary(LocatedAgent anAgent, ContinuousVector target) | simulator.geometry.boundaryConditions.BoundaryConstant | virtual |
dcIn | simulator.geometry.boundaryConditions.AllBC | protectedstatic |
dcOut | simulator.geometry.boundaryConditions.AllBC | protectedstatic |
getBulk() | simulator.geometry.boundaryConditions.AllBC | |
getBulkValue(int soluteIndex) | simulator.geometry.boundaryConditions.AllBC | |
getDistance(ContinuousVector cc) | simulator.geometry.boundaryConditions.AllBC | |
getIntersection(ContinuousVector position, ContinuousVector vector) | simulator.geometry.boundaryConditions.AllBC | |
getOrthoProj(ContinuousVector cc) | simulator.geometry.boundaryConditions.AllBC | |
getShape() | simulator.geometry.boundaryConditions.AllBC | |
getSide() | simulator.geometry.boundaryConditions.AllBC | |
getSideName() | simulator.geometry.boundaryConditions.AllBC | |
hasAgar | simulator.geometry.boundaryConditions.AllBC | protected |
hasAgar() | simulator.geometry.boundaryConditions.AllBC | |
hasBulk | simulator.geometry.boundaryConditions.AllBC | protected |
hasBulk() | simulator.geometry.boundaryConditions.AllBC | |
init(Simulator aSim, Domain aDomain, XMLParser aBoundCondMarkUp) | simulator.geometry.boundaryConditions.BoundaryConstant | virtual |
isActive() | simulator.geometry.boundaryConditions.AllBC | |
isCyclic | simulator.geometry.boundaryConditions.AllBC | protected |
isCyclic() | simulator.geometry.boundaryConditions.AllBC | |
isOutside(ContinuousVector cc) | simulator.geometry.boundaryConditions.AllBC | |
isOutside(DiscreteVector dc, SpatialGrid aSpatialGrid) | simulator.geometry.boundaryConditions.AllBC | |
isSupport() | simulator.geometry.boundaryConditions.AllBC | |
lookAt(ContinuousVector cc) | simulator.geometry.boundaryConditions.BoundaryConstant | virtual |
readGeometry(XMLParser geometryRoot, Domain aDomain) | simulator.geometry.boundaryConditions.AllBC | |
refreshBoundary(SoluteGrid aSoluteGrid) | simulator.geometry.boundaryConditions.BoundaryConstant | virtual |
refreshDiffBoundary(SoluteGrid relDiff, SoluteGrid aSolutegrid) | simulator.geometry.boundaryConditions.AllBC | |
setBoundary(LocatedGroup aGroup) | simulator.geometry.boundaryConditions.BoundaryConstant | virtual |
staticBuilder(XMLParser root, Simulator aSim, Domain aDomain) | simulator.geometry.boundaryConditions.AllBC | static |
updateAgar(SoluteGrid[] soluteGrid, SoluteGrid[] reactionGrid, double timeStep) | simulator.geometry.boundaryConditions.AllBC | |
updateBulk(SoluteGrid[] soluteGrid, SoluteGrid[] reacGrid, double timeStep) | simulator.geometry.boundaryConditions.AllBC | |