Data sets

• Proteome Exchange dataset from the paper: Probing the Complementarity of FAIMS and Strong Cation Exchange Chromatography in Shotgun Proteomics, JASMS, 2013, page 431-443.
• Zipped mgf file from SCX-ETD analysis of synthetic phosphopeptides, Analytical Chemistry, 2013, page 4836-4843.
• Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical Chemistry, 2013, page 4836-4843.

Databases

• Synthetic Phospho-peptide database, GPSGXVpSXAQLX(K/R) and SXPFKXpSPLXFG(K/R)
• Database containing the proteins from the six protein mix and trypsin

AMBER parameters

• Neutral C-terminus residue set
• Neutral N-terminus residue set
• Cysteine-S-Acetamide residue set